Oral Presentaions
The following abstracts have been selected for an oral presentation and are part of the final programme.
Number | Title | Authors |
---|---|---|
94 | Transferdynamics of the antibiotic resistance plasmid pOXA-48 in a hospital | Ricardo León-Sampedro | Javier de la Fuente | Cristina Díaz-Agero | Thomas Crellen | Patrick Musicha | Jerónimo Rodríguez-Beltrán | Marta Hernández García | Nieves López Fresneña | Patricia Ruiz-Garbajosa | Rafael Canton Moreno | Ben Cooper | Alvaro San Millan |
95 | Characterisationof mcr-5-harbouring plasmids and mobilegenetic elements in Salmonella usingshort-read and long-read sequencing technologies | Maria Borowiak | Carlus Deneke | Jennie Fischer | Jens André Hammerl | Simon H. Tausch | Istvan Szabo | Burkhard Malorny |
96 | Antibioticexposure and impact on the gut microbiome and resistome: A prospective clinicalmetagenomics multicenter cohort study | Matthias Willmann | Maria Vehreschild | Lena Maria Biehl | Wichard Vogel | Daniela Dörfel | Axel Hamprecht | Harald Seifert | Ingo B. Autenrieth | Silke Peter |
101 | High prevalence of vanB in non-enterococcal flora including a novel anaerobic species contributes topersistent outbreaks of vancomycin resistant enterococci in a Norwegianhospital | Randi Monsen Nygaard | Kristin Hegstad | Øyvind Kommedal | Paul Christoffer Lindemann |
104 | Intralaboratorycomparison of the Oxford Nanopore’s MinION sequencing device for microbialapplications | Marco Ivens | Bazante Sanders | Miao Miao Zhou | Brian van der Veer | Casper Jamin | Nicole van den Braak | Lieke Van Alphen | Eefje Schrauwen |
107 | Standardisation of Public Genomic Datasets of E. coli from Food-Animals:A First Step Towards Global Genomic Comparisons | João Pires | Jana Huisman | Sebastian Bonhoeffer | Thomas Van Boeckel |
114 | Genomic analysis explaining long term carriage of ESBL-producing E. coli acquired during international travel | Boas van der Putten | Jarne van Hattem | John Penders | Constance Schultsz |
117 | From sequence types to pathovars: Public health relevance of virulence markers in prospectively sequenced populations | Alicia Arnott | Rebecca Rockett | Verlaine Timms | Qinning Wang | Cristina Sotomajor | Vitali Sintchenko |
126 | Emergence of plasmid-mediated high-level tigecyclineresistance genes in animals and humans | Dejun Liu | Tao He | Ran Wang | Huangwei Song | Timothy R. Walsh | Jianzhong Shen | Yang Wang |
148 | Global Salmonella plasmid population dynamics andassociations with known antimicrobial resistance genes | James Robertson | Kyrylo Bessonov | Eduardo Taboada | John Nash |
174 | Tracking carbapenemase harbouringplasmids by application of long-read sequencing technology: a new dimension of surveillanceof MDR bacteria within the hospital setting | Silke Peter | Oberhettinger Philipp | Gross Caspar | Bader Baris | Hoffmann Nadine | Schmidt Annika | Liese Jan | Marschal Matthias | Willmann Matthias | Autenrieth Ingo | Ossowski Stephan |
180 | Chlamydia trachomatis outbreak: when the virulence-associated genome backbone imports aprevalence-associated major antigen signature | Vitor Borges | Dora Cordeiro | Ana Isabel Salas | Zohra Lodhia | Cristina Correia | Joana Isidro | Candida Fernandes | Ana Maria Rodrigues | Jacinta Azevedo | Joao Alves | Joao Roxo | Miguel Rocha | Rita Corte-Real | Luis Vieira | Maria Jose Borrego | João Paulo Gomes |
196 | The rise of Enterococcus faeciumST117 - a 20 years longitudinal analysis of a successful hospital-adaptedlineage | Jennifer Karin Bender | Carola Fleige | Bernd Neumann | Ingo Klare | Guido Werner |
203 | Genome wide association studies reveals the genetic factors that contribute to the success of Staphylococcus saprophyticus as a uropathogen | Opeyemi Lawal | Ons Bouchami | Peder Worning | Mette Damkjaer Bartels | Maria Luisa Goncalves | Paulo Paixão | Cristina Toscano | Elsa Filipa Pasmal De Almeida Goncalves | Henrik Westh | Maria Joao Fraqueza | H. De Lencastre | Maria Miragaia |
216 | Empowering data sharing for genomics-based public health surveillance using ontologies | Emma Griffiths | Damion Dooley | Gurinder Gosal | Ivan Gill | Shannon Russell | Lauren Tindale | Virginia Pichler | Thomas Matthews | Aaron Petkau | Josh Adam | Dan Fornika | Geoff Winsor | Finlay Maguire | Brian Alcock | Andrew McArthur | Robert Beiko | Morag Graham | Fiona Brinkman | Gary Van Domselaar | William Hsiao |
217 | Genomic investigations into Serratia marcescens causing outbreaks in neonatological intensive care units | Sandra Reuter | Swapnil Doijad | Yancheng Yao | Rafael Canton Moreno | Jari Jalava | Gunnar Skov Simonsen | Marek Gniadkowski | Jesus Oteo | Jane Turton | Timothy R. Walsh | Nina Nestorova | Trinad Chakraborty | Hajo Grundmann |
228 | Transmission of methicillin-resistant Staphylococcusaureus (MRSA) ST398 through the food chain in Portugal | Ons Bouchami | H. De Lencastre | Opeyemi Lawal | Maria Joao Fraqueza | Nuno Alexandre Faria | Maria Miragaia |
209 | Added value of implementing whole genome sequencing – a double-edgedsword | Eva Litrup | Susanne Schjørring | Katrine Joensen | Pernille Gymoese | Kristoffer Kiil | Mia Torpdahl |
235 | Genomics-based risk factoranalysis: identification of drivers associated with the spread of antimicrobialresistance in Salmonella enterica subsp. enterica serovarHeidelberg in Ontario, Canada | Benjamin Hetman | David Pearl | Dillon Barker | James Robertson | John Nash | Richard Reid-Smith | Jane Parmley | Amrita Bharat | Michael Mulvey | Eduardo Taboada |
244 | FT-IR spectroscopy: an effective method for real-time outbreak investigation | Jonathan Lellouche | Nadya Rakovitsky | Sammy Frenk | David Schwartz | Hadas Kon | Shirin Abramov | Polet Elmalih | Yehuda Carmeli |
245 | Campylobacter plasmids and niche adaptation | Aldert Zomer | Linda van der Graaf-van Bloois | Claudia Coipan | Hetty Blaak | Ciska Schets | Miriam Koene | Eelco Franz | Birgitta Duim | Lapo Mughini Gras | Jaap A. Wagenaar |
273 | Genomic Diversity, Antimicrobial Resistance and Virulence of Klebsiella pneumoniaefrom Animal Carriage: a Comprehensive Analysis in an One Health Perspective | Carla Rodrigues | Marisa Haenni | Maxime Bour | Cécile Ponsin | Jean-Louis Pinsard | Virginie Passet | Jean-Yves Madec | Sylvain Brisse |
276 | MultidimensionalSequence Typing (MDST): a new method to localize particular sequences in the universeof bacterial genomes | Miguel D. Fernandez-de-Bobadilla | Alba María Talavera Rodríguez | Fernando Baquero | Teresa Coque | Val Fernandez Lanza |
279 | Pangenome Analysis TOolkit (PATO): A newintegrative suite to analyze very large numbers of genomes. | Alba María Talavera Rodríguez | Miguel D. Fernandez-de-Bobadilla | Fernando Baquero | Teresa Coque | Val Fernandez Lanza |
280 | Whole genome sequencing of influenza: applications ininfection control and surveillance | Dan Frampton | Catherine Houlihan | Jude Heaney | Matt Byott | Paul Grant | Bridget Ferns | Eleni Nastouli |
284 | ONEIDA-INNUENDO - A bioinformatic platform forthe integration of genomics in surveillance and outbreak detection | Bruno Ribeiro Gonçalves | Miguel Machado | Mickael Silva | Diogo Silva | Mirko Rossi | Duarte-Correia Ana | Alexandre P Francisco | Mario N. Ramirez | Joao A. Carrico |
Poster Presentations
The following posters have been selected for presentation at IMMEM XII.
Poster Number | Title | Authors |
---|---|---|
28 | PCR-basedtyping methods for detecting S.pneumoniae serotypes in Bulgarian children | Mariya Malcheva | Ivan Simeonovski | Viktoria Levterova | Todor Kantardjiev |
31 | Streptococcus dysgalactiae a potential source of zoonotic infection in the kitchen | Tse Hsien Koh | Nurdyana Abdul Rahman | October Michael Sessions |
38 | Potential transmission of methicillin resistance genesbetween staphylococcal species on German dairy farms | Tobias Lienen | Arne Schnitt | Sven Maurischat | Bernd-Alois Tenhagen |
48 | The molecular epidemiology of Salmonella Typhimurium in Africa | Caisey Victoria Pulford | Blanca Perez Sepulveda | Jessica Bevington | Neil Hall | Francois-Xavier Weill | Melita Gordon | Nicholas Feasey | Kate Baker | Jay Hinton |
56 | NGS based molecular typing of Staphylococcushaemolyticus - replacing PFGE to increase resolution | Fuchs Manuela | Layer Franziska | Bender Jennifer | Thürmer Andrea | Werner Guido | Fuchs Stephan | Birgit Strommenger |
59 | The bag of tricksof vancomycin variable enterococci:an alternative constitutivevanHAX-promoter, varying copy numbersand transferable resistance | Theresa Wagner | Jessin Janice | Audun Sivertsen | Ingegerd Sjögren | Arnfinn Sundsfjord | Kristin Hegstad |
62 | Completegenome sequence of Salmonella enterica subsp.diarizonae serovar 61:k:1,5,(7), isolate16-SA00356, a serovar associated with sheep | Laura Uelze | Maria Borowiak | Carlus Deneke | Cécile Jacobs | István Szabó | Simon H. Tausch | Burkhard Malorny |
67 | The global phylogeography of a recently emerged Neisseria gonorrhoeae ST in Norway | Vegard Eldholm | Magnus N Osnes | Dominique A. Caugant | Kristian Alfsnes |
74 | Genome-basedbacterial identification system improves the taxonomic identities of the genomesequences in the public database | Sung-min Ha | Mauricio Chalita | Jongsik Chun |
81 | Genomic analysis of Staphylococcus aureus along a pork production chain and in the community, Shandong Province, China | Chengtao Sun | Baoli Chen | Anette Hulth | Stefan Schwarz | Lennart Nilsson | Shizhen Ma | Qiang Sun | Zhenwang Bi | Congming Wu | Stefan Börjesson |
80 | Coregenome MLST investigation on MRSA spatype t172 isolates in a low-prevalence area, Southwest Finland, 2007-2016 | Jaakko Silvola | Kirsi Gröndahl-Yli-Hannuksela | Jenna Junnila | MRSA -study group: Kari Auranen, Anu Harttio-Nohteri, Tiina Hirvioja, Laura Lindholm, Harri Marttila, Kaisu Rantakokko-Jalava, Esa Rintala | Jaana Vuopio |
82 | In vivo structural alterationsof a blaNDM-1 carryingIncA/C2 plasmid and complete sequence of its IncHI2-IncA/C2 co-integrate megaplasmidderivative generated during gastrointestinal passage in a broiler infectionstudy | Jennie Fischer | Sead Hadziabdic | Maria Borowiak | Burkhard Malorny | Angelina Bloch | Katharina Juraschek | Annemarie Käsbohrer | Beatriz Guerra | Istvan Szabo |
85 | The impact of different MRSA typing methods on infection prevention and control strategies - a single-centre experience | Monika Malecki | Frauke Mattner | Andreas Friedrich Wendel |
88 | Ciprofloxacin-resistant non-typhoid Salmonella isolated from food animals in South Korea | Suk-Kyung Lim | Dong-Chan Moon | Su-Jeong Kim | Bang-Hun Hyun |
89 | Globalspread of three multidrug-resistant lineages of Staphylococcus epidermidis: incidence in blood cultures in theNetherlands. | Artur Sabat | Erik Bathoorn | Viktoria Akkerboom | Christina Brühwasser | Alexander W. Friedrich |
91 | Genome-based pathogen surveillance: an use case of the new BIOMÉRIEUX EPISEQ®CS web-based software | Bruno Muller | Patrick Mollon | Emmanuelle Santiago-Allexant | Marilyne Rumigny | Caroline Mirande |
93 | bifrost: a platform for data analysis of collections with a start in quality control | Martin Basterrechea Salido | Kim Ng | Sharmin Baig | Marc Stegger | Paal Skytt Andersen |
97 | Metagenomic profiling using curated reference genome database revealed hitherto unrecognized species in the genus Streptococcus. | Mauricio Antonio Chalita Williams | Sung-min Ha | Jongsik Chun |
99 | Pseudomonas aeruginosa transmission efficacy determination by a novel algorithm based on whole genome sequencing in combination with patient data | Matthias Willmann | Madeleine Desch | Silke Peter | Jan Liese |
106 | Comparative genomics of Escherichia coli from 13 European ICUs | Janetta Top | Nienke Leonie Plantinga | Ad Fluit | Jelle Scharringa | Rob Willems |
109 | LA-MRSAin German pigsty workers- Recolonization or persistence? | Natalie Effelsberg | Sergej Udarcev | Hannah Müller | Iris Kobusch | Marc Boelhauve | Robin Köck | Mellmann Alexander |
110 | Helicase helPas prognostic biomarker in patients with Pseudomonasaeruginosa bloodstream infection | Matthias Willmann | Stephan Göttig | Daniela Bezdan | Boris Macek | Ana Velic | Matthias Marschal | Wichard Vogel | Ingo Flesch | Uwe Markert | Annika Schmidt | Pierre Kübler | Mumina Javed | Benedikt Jentzsch | Thomas Moritz | Philipp Oberhettinger | Monika Schuetz | Erwin Bohn | Stephan Ossowski | Ingo B. Autenrieth | Silke Peter |
111 | Genome-based analyses of Klebsiella pneumoniae to detect possiblehost- associations, host-adaptation and effects on virulence | Kathleen Klaper | Lena Heinrich | Walter Steffi | Roman Gerlach | Stephan Fuchs | Yvonne Pfeifer | Guido Werner |
112 | Molecular evidence for persistence and adaptationof a vancomycin-resistant Enterococcus faeciumST-203 clone in a central European tertiary care hospital | Mathilde Boumasmoud | Tiziano Angelo Schweizer | Vanina Dengler-Haureiter | Lilly Meyer | Denise Kühnert | Kati Seidl | Anne Holzmann-Bürgel | Peter W. Schreiber | Stefan P. Kuster | Roger Kouyos | Annelies Zinkernagel |
113 | Burkholderia cepacia complex infections caused by contaminated mouthwashsolutions in German hospitals in 2018 | Jennifer Karin Bender | Sebastian Haller | Michael Hogardt | Klaus-Peter Hunfeld | Andrea Thürmer | Markus Werner | Bernd Kunz | David Eisenberger | Niels Pfennigwerth | Volkhard Kempf | Guido Werner | Tim Eckmanns | Yvonne Pfeifer |
103 | Genome-based Surveillance for Rational Autogenous Vaccine Design to Control Campylobacter Infection in Poultry | Jessica Kate Calland | Ben Pascoe | Samuel K. Sheppard |
115 | Developing novelepidemiological marker scheme for Klebsiellapneumoniae based on MLST, capsule synthesis type and lipopolysaccharideserotype | Andrew Shelenkov | Yulia Mikhaylova | Yuri Yanushevich | Valeria Fomina | Mikhail Zamyatin | Dmitriy Shagin |
123 | Matrix-assisted laser desorption/ionization time-of flight mass spectrometry (MALDI-ToF MS) for epidemiological analysis of mastitis-associated pathogens in sheep flocks | Kate Bamford | Kevin Purdy | Andrew Bradley | Laura Green |
128 | A sentinel testing survey of plasmid-mediated(transferable) colistin resistance among Enterobacteriaceaein tertiary-care hospital. | Jan Tkadlec | Eva Smelikova | Marie Cabrnochova | Otakar Nyc | Pavel Drevinek | Marcela Krutova |
130 | Emergenceof a new KPC-3 variant in the high-risk clone ST307-K.pneumoniaeafter ceftazidime-avibactam exposure in a Tertiary Hospital in Madrid | Marta Hernández García | Javier Sánchez López | Manuel Ponce-Alonso | Maria Isabel Morosini Reilly | Rafael Canton Moreno | Patricia Ruiz-Garbajosa |
135 | Whole genomesequencing of Campylobacter jejunistrains isolated from human, broiler chicken and wild bird faecal samples | Elisenda Miró | Yaidelys Iglesias-Torrens | Teresa Llovet | Pedro Guirado | Carmen Muñoz | Cristina Madrid | Carlos Balsalobre | Ferran Navarro |
138 | Epidemiology of carbapenemase-producing Klebsiella pneumoniae in a Portuguese hospital: surveillance over a6-year period (2013-2018) | Marta Aires De Sousa | Jose Manuel Ortiz de la Rosa | Maria Luisa Goncalves | Ana Luísa Pereira | Patrice Nordmann | Laurent Poirel |
139 | International occurrence of an OXA-48 encoding plasmid infour European countries. | Casper Jamin | Lieke van Alphen | Marjolein Kluytmans-van den Bergh | Stefanie van Koeveringe | Natascha Perales Selva | Jan Kluytmans | Herman Goossens | Christian Hoebe | Paul Savelkoul | I-4-1-Health Study Group |
133 | The swansong of MLST: Comparative analysis of the two Acinetobacter baumannii schemes | Stefano Gaiarsa | Gherard Batisti Biffignandi | Eliana Pia Esposito | Michele Castelli | Keith Adrian Jolley | Sylvain Brisse | Davide Sassera | Raffaele Zarrilli |
140 | Pathogenwatch: A Global Platform for Genomic Surveillance | Richard Goater | Silvia Argimón | Khalil Abudahab | Ben Taylor | Corin Yeats | David Aanensen |
144 | Comparisonof wgMLST (BioNumerics) vs mapping and core-genome SNPs approach for theepidemiological investigations of Pseudomonasaeruginosa | Dominique S. Blanc | Bárbara Magalhães | Laurence Senn |
146 | Integrated Aquaculture Contributes to the Transfer of mcr-1 between Animals and Humans Via theAquaculture Supply Chain | Yingbo Shen | Ziquan Lv | Lu Yang | Dejun Liu | Jianzhong Shen | Junjie Xia | Yuebin Ke | Yang Wang |
147 | Usefulness of wholegenome sequencing in the investigation of discordant phenotypes and genotypesin paired Staphylococcus aureus blood culture isolates | Isabella Tickler | Richard Goering | Scott Dewell | Victoria Le | Anne Obradovich | Fred C. Tenover |
154 | A Nosocomial Respiratory Infection Outbreakof Carbapenem-non-susceptible Escherichiacoli ST131 with multiple transmissible blaKPC-2carrying plasmids | Li Juan | Jinxing Lu | Xia Chen |
155 | Evaluationof Staphylococcus aureus subtypingmodule for MRSA detection basedon MALDI-TOF MS | Yanyan Hu | yonglu huang | yangzi lizhou | jiaping li | Rong Zhang |
156 | Evolutionary Snapshot of AustralianMethicillin-resistant Staphylococcusaureus (MRSA) bacteraemia isolates in 2015-2017 | Stanley Pang | Denise Daley | Yung Thin Lee | Geoffrey Coombs |
157 | Molecularcharacteristics of the van operon in vancomycin resistant E. faecium blood stream infection isolates in Australia | Terence Lee | Stanley Pang | Sam Abraham | Geoffrey Coombs |
159 | Rapid prospective strain typing to identify unsuspectednosocomial transmission of MRSA and VRE | Matthew O'Sullivan | Marc Ramsperger | Cecilia Li | Marion Yuen | Vijay Errappa | Miechelline Magallanes | Kathryn O'Donnell | Patricia Ferguson |
158 | Colistin resistant Escherichia coli isolated from a mixedfarm (bovine, swine and the farmer): a One-health study applying Nanoporesequencing for metagenomics. | Joaquim Vines | Olga Francino | Anna Cusco | Sebastian Napp | Judith Gonzalez | Ana Perez de Rozas | Lourdes Migura-Garcia |
162 | Use of MLVA and WGS based approaches for investigation of outbreak causedby monophasic Salmonella Typhimurium | Sandra Janezic | Alenka Storman | Tatjana Frelih | Eva Grilc | Marija Trkov | Maja Rupnik |
163 | Characterisation of Neisseria gonorrhoeae isolates using acore-genome MLST scheme | Paul G Higgins | Julia Wille | Harald Seifert |
161 | Increased prevalence oflinezolid resistance among clinical enterococci in Norway mainly due to spreadof optrA E. faecalis | Jessin Janice James Peter | Joachim Hegstad | Ellen Josefsen | Kristin Hegstad | Arnfinn Sundsfjord |
165 | Mapping Antimicrobial Resistance in Livestock in Low-and Middle-Income Countries | Thomas Van Boeckel | João Pires | Reshma Silvester | Cheng Zhao | Julia Song | Marius Gilbert | Sebastian Bonhoeffer | Ramanan Laxminarayan |
168 | Three genotyping methodsto assess diversityof pathogenic Yersinia enterocolitica in its reservoir, the pig. | Emilie Esnault | Raymond Pierre | Houard Emmanuelle | Hirchaud Edouard | Denis Martine |
171 | Characterisation of a vancomycin-resistantand a vancomycin-susceptible Enterococcusfaecium isolate from the same blood culture | Kyriaki Xanthopoulou | Julia Wille | Janine Zweigner | Kai Lucassen | Thorsten Wille | Harald Seifert | Paul Higgins |
172 | Combination of epidemiological andNext-generation sequencing data to determine the contribution of the aqueousenvironment for Pseudomonas aeruginosacolonization of high-risk haemato-oncology patients | Liese Jan | Bender Viviane | Grashorn Sebastian | Hoffmann Nadine | Bader Baris | Silke Peter |
175 | Antimicrobial resistance and virulence factors incephalosporin resistant E. coli from retail meat | Ewelina Iwan | Magdalena Zając | Aleksandra Giza | Arkadiusz Bomba | Dariusz Wasyl |
169 | Within-host evolutionof Streptococcus pneumoniae amongchildren attending a day-care center | Tiago Touret | Hermínia de Lencastre | Raquel Sá-Leão |
173 | Retrospectivegenome analysis of Acinetobacterbaumannii to investigate local population structure | Andrea Groß | Sandra Reuter | Winfried Ebner | Julia Rauch |
177 | A double multi-fragment recombination eventoriginated the Streptococcus pneumoniaeserotype 11A-PMEN3 clone that is spreading in Southwest Europe. | Aida González Díaz | Miguel Machado | Jordi Càmara | Jose Yuste | Emmanuelle Varon | Miriam Domenech | Maria Del Grosso | Jose Maria Marimon Ortiz de Zarate | Emilia Cercenado | Nieves Larrosa | María Dolores Quesada | Dionisia Fontals | Meritxell Cubero | João Carriço | Sara Marti | Mário Ramirez | Carmen Ardanuy Tisaire |
143 | Surveillance of methicillin-resistant Staphylococcus aureus by standard molecular typing and deciphering of unusual carriage in a maternity ward by whole genomesequencing | Elisabeth Wehrle | Vera Portillo | Sylvain Meylan | Lisa Brockhaus | Marianne Burr | Luce Bertaiola Monnerat | Charly Nusbaumer | Bruno Grandbastien | Dominique S. Blanc |
179 | Preliminary study ofthe transmission potential of AMR and virulence genes in the E.coli wild boars isolates | Aleksandra Giza | Magdalena Zajac | Ewelina Iwan | Łukasz Pruss | Dariusz Wasyl |
185 | A story of success: rmtB methylase gene, pHN7A8 plasmid and Escherichia coli ST1196 in Waste WaterTreatment Plants | José Francisco Delgado Blas | Cristina Martinez Ovejero | Irene Sanchez-Mendez | Sophia David | Maria Pilar Garcillan | Fernando De La Cruz | David Aanensen | Muniesa Maite | Bruno Gonzalez-Zorn |
186 | Completegenome sequencing: a new standard for typing of molluscumcontagiosum virus isolates? | Tomaž Mark Zorec | Lea Hošnjak | Mario Poljak |
189 | Intestinal colonization of Leclercia adcarboxylata carrying mcr-4.3 and blaIMP-4 bearing plasmids | Qiaoling Sun | Ning Dong | Sheng Chen | Rong Zhang |
193 | Whole genome sequencing gives n“ewe” insights into therole of Dichelobacter nodosus in the pathogenesis of footrot in sheep | Zoe Willis | David Aanensen | Julian Parkhill | Sara Frosth | Martin Ganter | Marianne Gilhuus | Rose Grogono-Thomas | Judith Rohde | Kevin Purdy | Laura Green |
195 | Whole Genome Sequencing for cluster detection and characterization of Salmonella Rissen isolates from Portugal | Leonor Silveira | Miguel Pinto | Joana Isidro | Ângela Pista | Patrícia Themudo | Luís Vieira | Jorge Machado | João Paulo Gomes |
194 | Clinical Enterococcus faecalis isolates resistant to tigecycline | Iwona Gawryszewska | Dorota Żabicka | Waleria Hryniewicz | Ewa Sadowy |
200 | Typingand monitoring of emerging group B Streptococcus strain types using MALDI-TOF-MS in Hong Kong. | Dulmini Nanayakkara | Julian Rothen | Carmen Li | Claudia Daubenberger | Frederic Foucault | Valentin Pfluger | Margaret Ip |
201 | MBL-producingnon-aeruginosa Pseudomonas spp. inPoland in 2003-2016 – population structure and resistome | Paweł Urbanowicz | Radosław Izdebski | Anna Baraniak | Dorota Żabicka | Waleria Hryniewicz | Marek Gniadkowski |
204 | The AFROStrepRegistry: Report of the prevalence of pharyngeal group A streptococcal emm-types in Cape Town, South Africa | Mogamat Taariq Salie | Kelin Engel | Kimona Rampersadh | Dylan Barth | Babu Muhammed | James Dale | Mark Engel |
206 | Genome – based surveillance of Clostridioidesdifficile ribotype 017 sublineages circulating in Portugal | Andrea Santos | Joana Isidro | Vitor Borges | João Paulo Gomes | Mónica Oleastro |
207 | CombiningWGS, epidemiological data and contact network-based analyses to disclosetransmission events and population changes of VRE within a hospital setting | Bernd Neumann | Jennifer Karin Bender | Ulrich Vogel | Benjamin Maier | Alice Wittig | Dirk Brockmann | Lothar H. Wieler | Guido Werner |
210 | Comparing SNP- and cgMLST- based analyses of Enterococcus faecium and Enterococcus faecalis | Bernd Neumann | Jennifer Karin Bender | Stephan Fuchs | Guido Werner |
211 | Genetic basis forantimicrobial resistance (AMR) and population structure of Campylobacter jejuni isolated from broilers and turkeys in Italy | Manuela Iurescia | Patricia Alba | Virginia Carfora | Daniele Ballaro' | Francesco Bottoni | Fiorentino Stravino | Tania Tagliaferri | Anna Vanni | Alessia Franco | Antonio Battisti |
214 | Virulence and antibiotic resistance plasticityof Arcobacter butzleri: insights on thegenomic diversity of an emerging human pathogen | Joana Isidro | Susana Ferreira | Miguel Pinto | Fernanda Domingues | Mónica Oleastro | João Paulo Gomes | Vitor Borges |
213 | StrengtheningMycobacterium tuberculosissurveillance through culture-independent whole-genome sequencing | Rita Macedo | Joana Isidro | Miguel Pinto | Vitor Borges | João Paulo Gomes |
215 | Canada’s Integrated Rapid Infectious Disease Analysis Platform (IRIDA) | Tom Matthews | Franklin Bristow | Aaron Petkau | Josh Adam | Jeffrey Thiessen | Sukhdeep Sidhu | Peter Kruczkiewicz | Damion Dooley | Emma Griffiths | Dan Fornkia | Geoff Winsor | Amogelang R. Raphenya | Morag Graham | Andrew G. McArthur | Eduardo Taboada | Robert Beiko | Fiona Brinkman | William Hsiao | Gary Van Domselaar |
218 | Time-resolved evolution and host association of mammal associated Campylobacter fetus | Birgitta Duim | Aldert Zomer | Torey Looft | Arjen Timmerman | Jaap A. Wagenaar | Linda van der Graaf-van Bloois |
221 | Use ofwhole genome sequencing for analysis of Staphylococcusaureus transmission from mother`s milk to infant: a case report. | Sandra Janezic | Ana Cencic | Jernej Dolinsek | Maja Rupnik |
225 | MRSA in the age of migration:data from the German National Reference Centre for Staphylococci andEnterococci 2014 - 2017 | Franziska Layer | Regina Selb | Sabine Albert-Braun | Birgit Strommenger | Guido Werner |
224 | WGS - based analysis of SalmonellaNewport and Bardo strains isolated from different sources | Magdalena Zajac | Magdalena Skarzynska | ewelina kamińska | Anna Lalak | Renata Kwit | Aleksandra Smialowska-Weglinska | Łukasz Pruss | Arkadiusz Bomba | Dariusz Wasyl |
226 | ESBL Escherichia coli diversity amongst meat and meat sellers in North-Western Tanzania | Jeremiah Seni | Nyambura Moremi | Vitus Silago | Stephen Mshana | Louise Matthews | Ruth Zadoks | Katarina Oravcova |
222 | In-hostgenetic diversity and persistence of ESBL-producing Enterobacteriales overtime | Lisandra Aguilar Bultet | Isabelle Vock | Adrian Egli | Tanja Stadler | Sarah Tschudin-Sutter |
229 | MRSAin bloodstream infections in Portugal: diversification and dissemination patternsof the EMRSA-15 clone | Nuno Alexandre Faria | Maria Miragaia | H. De Lencastre |
231 | Analysis of NGS reads for surveillance andclonality: an example with ESBL-producing K. pneumoniae | Neris Garcia-Gonzalez | Rosario Moreno | Susana Sabater | barbara gomila sard | Fernando Gonzalez-Candelas |
234 | Prevalenceand contribution of mobile genetic elements and virulence genes inextended-spectrum beta-lactamase-producing Klebsiellapneumoniaeoutbreaks inthree parallel neonatal intensive care units | Sammy Frenk | Nadya Rakovitsky | Jonathan Lellouche | Vered Schechner | Regev Cohen | Bat Sheva Kloyzner | Mitchell Schwaber | Ester Solter | Shoshana Cohen | Sarit Stepansky | Svetlana Paikin | Yehuda Carmeli |
237 | Implementation of Next generation sequencing for routine surveillance and characterizationof Listeria monocytogenes in Israel, 2016-2019 | Analia Veronica Ezernitchi | Elizabeth Sirotkin | Jacob Moran-Gilad | Lea Valinsky | Assaf Rokney |
238 | Whole genome sequence characterization of DSA-Shigellain Israel | Analia Veronica Ezernitchi | Elizabeth Sirotkin | Dana Danino | Vered Agmon | Lea Valinsky | Assaf Rokney |
243 | PulseNetUSA experience with the implementation of whole genome sequencing (WGS) for foodborne disease surveillance | Heather Carleton | Peter Gerner-Smidt |
236 | Development of strain nomenclature for outbreak surveillance based oncore genome MLST for Salmonella enterica | Heather Carleton | Sung Im | Beth Tolar | Grant Williams | Hannes Pouseele | Peter Gerner-Smidt |
247 | Application of Wholegenome sequencing for typing and surveillance of Clostridioides difficile in Denmark | Søren Persson | Mark Østerlund | Katrine Joensen | Gitte Sørensen | Eva Moller Nielsen |
250 | Nation-wide outbreak of Klebsiellapneumoniae ST11 NDM-1 in Poland, 2012-2018, analysed by the WGS approach | Radosław Izdebski | Michał Sitkiewicz | Sylvain Brisse | Marek Gniadkowski |
251 | A long-term MRSA t5147/ST88 outbreak among iv drug abusers and homeless peoplein Copenhagen | Mette Damkjaer Bartels | Mona KA Holm | Peder Worning | Uffe Vest Schneider | Henrik Thiesen | Henrik Westh |
246 | Taxonomic vote: a new method to assign taxonomy after similarity searches | Neris Garcia-Gonzalez | Fernando Gonzalez-Candelas |
248 | Whole genome sequencingdata analysis pipelines for definition of clonality, genetic distances, genecontent, and phylogeny of bacterial pathogens | Migle Gabrielaite | Rasmus Marvig |
254 | High comparability despite use of different laboratory and analysis approachesfor Listeria monocytogenes clusteridentification by Whole Genome Sequencing. | Susanne Schjørring | Gitte Sørensen | Kristoffer Kiil | Taina Niskanen | Eva Moller Nielsen |
258 | Geneticanalysis of plasmid-encoded mcr-1 mediatedresistance in Enterobacteriaceae | Bazante K. Sanders | Miaomiao Zhou | Nicole P.W.C.J. van den Braak | Danny Duijsings | Jan A.J.W. Kluytmans | Eefje Schrauwen |
261 | Development and application of a whole genome MLST scheme for Cutibacterium acnes | Nikolaos Strepis | Willemien H.A. Zandijk | Nelianne J. Verkaik | Corné H. Klaassen |
262 | BARiSTA: A framework for Bayesian allele recovery in sequence typing analysis | Dillon Barker | Eduardo Taboada |
241 | Hepatitis C virus subtyping in a clinicalsetting with Next Generation Sequencing provides additional information now andin the future. | Martin Schou Pedersen | Lone Gilmore | Jens Bukh | Kristian Schønning |
263 | Molecular diagnosticsreveals persistence of serotype 3 as the main cause of pediatric complicatedpneumonia in Portugal despite extensive PCV13 use | Catarina Silva-Costa | Marcos Daniel Pinho | Ana Friães | Joana Gomes-Silva | Soraia I Guerreiro | Maria Joao Brito | Mario N. Ramirez | José Melo-Cristino |
266 | SOLIDNESS - Surveillance Of mobiLome meDiated aNtibiotic rEsiStance Spread | Natacha Couto | John Rossen |
267 | Characterization of the genetic lineages responsiblefor pediatric invasivepneumococcal disease in Portugal (1999-2015) | Joana Gomes-Silva | Catarina Silva-Costa | Mario N. Ramirez | José Melo-Cristino |
269 | Food origin and gut human carriage of Enterobacter spp. isolates harbouring the rare extended-spectrum beta-lactamase SFO-1. | Silvia García-Cobos | John Rossen | Natacha Couto | Erwin G. Raangs | Jan A. J. W. Kluytmans | Alexander W. Friedrich |
270 | Methicillin-resistantStaphylococcus pseudintermedius (MRSP) surveillance with nanopore long reads: Whole Genome Sequencing, antimicrobial resistance and within-hostvariability in infection | Olga Francino | Joaquim Vines | Anna Cusco | Lourdes Migura-Garcia | Armand Sanchez | Lluis Ferrer |
268 | Agenome-wide epidemiological study on Pseudomonasaeruginosa distribution and circulation in Northeast Italy | Irene Bianconi | Olivier Jousson |
272 | Extensively drug-resistant Salmonella typhi in a pregnant travelerreturning from Pakistan to Denmark, 2019 | Sarah Mollerup | Peder Worning | Martin Schou Pedersen | Henrik Torkil Westh | Uffe Vest Schneider | Anne Line Engsbro |
275 | Comparative genomics analysis of optrA-carrying Enterococcusfaecalis strains: new insights on clonal and genetic hotspots for optrA acquisition | Ana Raquel Freitas | Ana P. Tedim | Carla Novais | Luisa Maria Vieira Peixe |
281 | Analysis of the intestinal resistome of Amerindians from the French Guiana and individuals from European countries | Miguel D. Fernandez-de-Bobadilla | Fernando Baquero | Jose Luis Martinez | Antoine Andremont | Etienne Ruppe | Val Fernandez Lanza | Teresa Coque |
282 | Metagenomictools comparison on16S rRNA Sequences | Alba María Talavera Rodríguez | Laura Judith Marcos-Zambrano | enrique carrillo de santa pau | sergio serrano villar | Val Fernandez Lanza |
285 | Validation of Fourier-Transform Infrared spectroscopy for cost-effective detection of nosocomial outbreaks | Ângela Novais | Raquel Duro | Paulo Andrade | Filipa Ceia | Claudia Teixeira | Edgar Botelho-Moniz | Yuliana Eremina | Maria Ribeiro | Luisa Maria Vieira Peixe |
286 | Identification and typing of dengue virusesdirectly from patient samples with DEN-IM | Catarina Mendes | Erley Lizarazo | Miguel Machado | Diogo Silva | Adriana Tami | Mario N. Ramirez | Natacha Couto | John Rossen | Joao A. Carrico |
287 | An outbreak of Klebsiella pneumoniae carbapenemase-producing Klebsiella pneumoniae in a regional teaching hospital | Yi-Ching Huang |
289 | Introductionand clonal spread of vanB E. faecium in Copenhagen, Denmark 2019 | Mette Pinholt | Peder Worning | Sarah Mollerup | Kristian Schønning | Henrik Westh |
290 | Genomicanalysis of Enterococcus faecium isolates causing bacteremia inMadrid, Spain. | Alba María Talavera Rodríguez | Ana P. Tedim | Fernando Baquero | Val Fernandez Lanza | Teresa Coque |
296 | Clonal contamination of laying hens farm by Salmonella enterica serovar Enteritidis responsible for a multi-annual outbreak demonstrated through phylodynamic reconstruction | Erika Scaltriti | Luca Bolzoni | Chiara Bracchi | Laura Soliani | Marina Morganti | Stefano Pongolini |
300 | I-4-1-Health: Multi-centre surveillance of multidrug resistant Enterobacteriaceae reveals strong host specificity and no spread between livestock and humans. | Casper Jamin | Lieke van Alphen | Francisca Velkers | Tijs Tobias | Arjan Stegeman | Marjolein Kluytmans-van den Bergh | Jan Kluytmans | Christian Hoebe | Paul Savelkoul |
301 | Molecular characterization and genomic epidemiology of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli and Klebsiella pneumoniae isolated from children in Qatar | Kin Ming (Clement) Tsui | Patrick Tang | Mohammad Rubayet Hasan | Andres Perez-Lopez |
302 | Ongoing outbreak of OXA-244 carbapenemase-producing Enterobacterales in Germany is driven by clonal expansion of E. coli ST38 | Joerg B. Hans | Rolf Kramer | Katrin Kremer | Niels Pfennigwerth | Sebastian Haller | Annicka Reuss | Yvonne Pfeifer | Guido Werner | Tim Eckmanns | Sören G. Gatermann |
303 | A genus-wide genomics survey of antibiotic resistance in Klebsiella species recovered from multiple human, animal and environmental niches within a single town in northern Italy | Harry Thorpe | Edward Feil |
305 | Lyb-2-4, a unique genomic region of carbapenem-resistantAcinetobacter baumannii associated with fatal outcome | Wei Huang | Min Zhang |
306 | Rapid identification of Hypervirulent Carbapenem-resistant Acinetobacter baumannii from the outbreaks | Wei Huang |